email: fpasha@fas.harvard.edu



Publications


See my Google Scholar page for the most updated list of my publications.

Preprints


Stochastic Gradient Descent-induced drift of representation in a two-layer neural network


F Pashakhanloo, A Koulakov

arXiv preprint arXiv:2302.02563, Accepted in International Conference on Machine Learning (ICML), 2023


Selected Publications


Minimal Functional Clusters Predict the Probability of Reentry in Cardiac Fibrotic Tissue.


F. Pashakhanloo, A. Panfilov

Physical review letters, 2021


Machine learning phenotyping of scarred myocardium from cine in hypertrophic cardiomyopathy.


J. Mancio, F. Pashakhanloo, Hossam El-Rewaidy, J. Jang, Gargi Joshi, I. Csécs, L. Ngo, E. Rowin, W. Manning, M. Maron, R. Nezafat

European heart journal cardiovascular Imaging, 2021


Multi‐domain convolutional neural network (MD‐CNN) for radial reconstruction of dynamic cardiac MRI


Hossam El-Rewaidy, A. Fahmy, F. Pashakhanloo, Xiaoying Cai, S. Kucukseymen, I. Csécs, U. Neisius, Hassan Haji-Valizadeh, B. Menze, R. Nezafat

Magnetic resonance in medicine, 2020


Role of 3-Dimensional Architecture of Scar and Surviving Tissue in Ventricular Tachycardia: Insights From High-Resolution Ex Vivo Porcine Models


F. Pashakhanloo, D. Herzka, H. Halperin, E. McVeigh, N. Trayanova

Circulation. Arrhythmia and electrophysiology, 2018


Myofiber Architecture of the Human Atria as Revealed by Submillimeter Diffusion Tensor Imaging


F. Pashakhanloo, D. Herzka, H. Ashikaga, S. Mori, N. Gai, D. Bluemke, N. Trayanova, E. McVeigh

Circulation. Arrhythmia and electrophysiology, 2016


All Publications


Assessment of arrhythmia mechanism and burden of the infarcted ventricles following remuscularization with pluripotent stem cell-derived cardiomyocyte patches using patient-derived models.


Joseph Yu, Jialiu A Liang, William H. Franceschi, Qinwen Huang, F. Pashakhanloo, E. Sung, P. Boyle, N. Trayanova

Cardiovascular research, 2021


Constructing a Human Atrial Fibre Atlas


C. Roney, R. Bendikas, F. Pashakhanloo, C. Corrado, E. Vigmond, E. McVeigh, N. Trayanova, S. Niederer

Annals of Biomedical Engineering, 2020


Association Between Left Ventricular Mechanical Deformation and Myocardial Fibrosis in Nonischemic Cardiomyopathy


I. Csécs, F. Pashakhanloo, A. Paskavitz, J. Jang, T. Al-Otaibi, U. Neisius, W. Manning, R. Nezafat

Journal of the American Heart Association, 2020


Discordance in Scar Detection Between Electroanatomical Mapping and Cardiac MRI in an Infarct Swine Model.


S. Kucukseymen, H. Yavin, M. Barkagan, J. Jang, Ayelet Shapira-Daniels, Jennifer Rodriguez, David Shim, F. Pashakhanloo, Patrick Pierce, L. Botzer, W. Manning, E. Anter, R. Nezafat

JACC. Clinical electrophysiology, 2020


Local Conduction Velocity in the Presence of Late Gadolinium Enhancement and Myocardial Wall Thinning.


J. Jang, J. Whitaker, E. Leshem, L. Ngo, U. Neisius, S. Nakamori, F. Pashakhanloo, B. Menze, W. Manning, E. Anter, R. Nezafat

Circulation. Arrhythmia and electrophysiology, 2019


A comprehensive, multiscale framework for evaluation of arrhythmias arising from cell therapy in the whole post-myocardial infarcted heart


Joseph Yu, William H. Franceschi, Qinwen Huang, F. Pashakhanloo, P. Boyle, N. Trayanova

Scientific Reports, 2019


Sensitivity of reentrant driver localization to electrophysiological parameter variability in image-based computational models of persistent atrial fibrillation sustained by a fibrotic substrate.


D. Deng, Michael J. Murphy, Joe B Hakim, William H. Franceschi, Sohail Zahid, F. Pashakhanloo, N. Trayanova, P. Boyle

Chaos, 2017


Imaging-Based Simulations for Predicting Sudden Death and Guiding Ventricular Tachycardia Ablation.


N. Trayanova, F. Pashakhanloo, Katherine C. Wu, H. Halperin

Circulation. Arrhythmia and electrophysiology, 2017


Feasibility of using patient-specific models and the "minimum cut" algorithm to predict optimal ablation targets for left atrial flutter.


Sohail Zahid, Kaitlyn N Whyte, Erica L Schwarz, R. Blake, P. Boyle, J. Chrispin, A. Prakosa, E. G. Ipek, F. Pashakhanloo, H. Halperin, H. Calkins, R. Berger, S. Nazarian, N. Trayanova

Heart rhythm, 2016


Accuracy of prediction of infarct-related arrhythmic circuits from image-based models reconstructed from low and high resolution MRI


D. Deng, H. Arevalo, F. Pashakhanloo, A. Prakosa, H. Ashikaga, E. McVeigh, H. Halperin, N. Trayanova

Front. Physiol., 2015


Image-based reconstruction of three-dimensional myocardial infarct geometry for patient-specific modeling of cardiac electrophysiology.


E. Ukwatta, H. Arevalo, Martin Rajchl, James White, F. Pashakhanloo, A. Prakosa, D. Herzka, E. McVeigh, A. Lardo, N. Trayanova, F. Vadakkumpadan

Medical physics, 2015


Image-based reconstruction of 3D myocardial infarct geometry for patient specific applications


E. Ukwatta, Martin Rajchl, J. White, F. Pashakhanloo, D. Herzka, E. McVeigh, A. Lardo, N. Trayanova, F. Vadakkumpadan

Medical Imaging, 2015


The association of left atrial low-voltage regions on electroanatomic mapping with low attenuation regions on cardiac computed tomography perfusion imaging in patients with atrial fibrillation.


Z. Ling, John McManigle, V. Zipunnikov, F. Pashakhanloo, I. Khurram, Stefan L. Zimmerman, Binu Philips, J. Marine, D. Spragg, H. Ashikaga, H. Calkins, S. Nazarian

Heart rhythm, 2015


Methodology for image-based reconstruction of ventricular geometry for patient-specific modeling of cardiac electrophysiology.


A. Prakosa, P. Malamas, S. Zhang, F. Pashakhanloo, H. Arevalo, D. Herzka, A. Lardo, H. Halperin, E. McVeigh, N. Trayanova, F. Vadakkumpadan

Progress in biophysics and molecular biology, 2014


The Association of Pre-Existing Left Atrial Fibrosis with Clinical Variables in Patients Referred for Catheter Ablation of Atrial Fibrillation


Jane Dewire, I. Khurram, F. Pashakhanloo, D. Spragg, J. Marine, R. Berger, H. Ashikaga, J. Rickard, Stefan L. Zimmerman, V. Zipunnikov, H. Calkins, S. Nazarian

Clinical Medicine Insights. Cardiology, 2014


Estimation of ventricular fiber orientations in infarcted hearts for patient-specific simulations


F. Vadakkumpadan, H. Arevalo, F. Pashakhanloo, Anthony Alers, F. Dawoud, K. Schuleri, D. Herzka, E. McVeigh, A. Lardo, N. Trayanova

2013 IEEE 10th International Symposium on Biomedical Imaging, 2013


3 D High-Resolution Diffusion Tensor Imaging of Heart ex-vivo after Myocardial Infarction in Porcine Model


F. Pashakhanloo, M. Schär, R. Beinart, M. Zviman, H. Halperin, S. Mori, N. Gai, D. Bluemke, E. McVeigh, D. Herzka

2012

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